Welcome to the public wiki of the Mouse Imaging Centre.
Software developed at MICe:
Analysis of data inside MINC volumes.
|MAGeT||Creating atlases with multiple automatically generated templates|
|Longitudinal registration tools||Alternate approaches to registration and analysis of longitudinal data.|
|Pairwise nonlinear registration||Pairwise nonlinear registration of a number of input volumes. A potential alternative to the MICe-build-model pipeline.|
Suite of MINC tools developed at the Mouse Imaging Centre
Iterative registration to create a consensus average of a set of MRIs
Visualize geometry and associated files
Software to construct and run pipelines (image registration and otherwise)
Software to reconstruct OPT images
|ct_to_minc||software to create a 3D minc file from .tif files (microCT)|
Atlases developed at the Mouse Imaging Centre can currently be found here: http://www.mouseimaging.ca/technologies/mouse_atlas.html
Atlases currently under development and available for use at the Mouse Imaging Centre can be found here: Mouse Brain Atlases
Code for running the MAGeT algorithm for atlas generation is available for download. More information can be found on the MAGeT wiki page.