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Welcome to the public wiki of the Mouse Imaging Centre.


Software developed at MICe:




Analysis of data inside MINC volumes.

MAGeTCreating atlases with multiple automatically generated templates
Longitudinal registration toolsAlternate approaches to registration and analysis of longitudinal data.
Pairwise nonlinear registrationPairwise nonlinear registration of a number of input volumes. A potential alternative to the MICe-build-model pipeline.

minc-stuffs (formerly mice-minc-tools)

Suite of MINC tools developed at the Mouse Imaging Centre


Iterative registration to create a consensus average of a set of MRIs


Visualize geometry and associated files


Software to construct and run pipelines (image registration and otherwise)


Software to reconstruct OPT images

ct_to_mincsoftware to create a 3D minc file from .tif files (microCT)


Atlases developed at the Mouse Imaging Centre can currently be found here:

Atlases currently under development and available for use at the Mouse Imaging Centre can be found here: Mouse Brain Atlases

Code for running the MAGeT algorithm for atlas generation is available for download. More information can be found on the MAGeT wiki page.

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