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Welcome to the public wiki of the Mouse Imaging Centre.

Software.

Software developed at MICe:

Name

Description

RMINC

Analysis of data inside MINC volumes.

MICe-minc-tools

Suite of MINC tools developed at the Mouse Imaging Centre

MICe-build-model

Iterative registration to create a consensus average of a set of MRIs

brain-view

Visualize geometry and associated files

PydPiper

Software to construct and run pipelines (image registration and otherwise)

OPT_recon

Software to reconstruct OPT images

Atlases.

Atlases developed at the Mouse Imaging Centre can currently be found here: http://www.mouseimaging.ca/research/mouse_atlas.html

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