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This page overlaps substantially with the page on the module system at MICe (here).  As such, non-Pydpiper-specific information here should be merged into that page and this page should probably be deleted.

The MICe machines use the `lmod` software to provide versioned software through a series of "environment modules", which is really just a set of bash functions to automatically set certain paths and some helpful tools for managing these.


A number of modules are loaded by default through the "stdenv" module: 

Code Block
$ module list
Currently Loaded Modules:
  1) OCCIviewer              6) pyminc/0.51                11) R/3.4.1
  2) minc-toolkit/1.9.15     7) minc-stuffs/0.1.21         12) Fiji/1.51n
  3) python/3.6.2            8) pydpiper/2.0.9             13) slurm/17.02.7
  4) parallel/20170822       9) tagtoxfm_bspline/f5639af3  14) brain-view2/0.1.2
  5) qbatch/1.0.1-318bdd42  10) MICe-lab/0.15              15) stdenv/1.0.1


which is fairly self-explanatory.



Loading python/3.x modules will overwrite your existing $PYTHONPATH.  (This means you might have to do some manual fiddling to use Python software from unusual locations - let me know if this occurs.)