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find $PIPELINEPATH -name tmp -type d -exec rm -rf \{} \;
for file in *_processed/*/resampled/*{__concat_lsq6_N_I_lsq6_lsq12_and_nlin-resampled.mnc,_N_I_lsq6_avg_lsq12-resampled.mnc}; do if [ -f $file ]; then rm -f $file; fi; done
\
for file in *_processed/*/transforms/*{_mt_to_,_N_I_lsq6_lsq12_and_nlin_inverted,__concat_lsq6_N_I_lsq6_lsq12_and_nlin}*; do if [ -f $file ]; then rm -f $file; fi; done
\
for file in *_processed/*/transforms/*N_I_lsq6_lsq12_and_nlin__concat_inverted_linear_part*; do if [ -f $file ]; then rm -f $file; fi; done
for file in *_processed/*/masking/transforms \/*{mt_to_Dorr_2008_Steadman_2013_Ullmann_2013_on_NRXN1a_v1_average_lsq12,mt_to_Dorr_2008_Steadman_2013_Ullmann_2013_on_NRXN1a_v1_average_nlin_5}*; do if [ -f $file ]; then rm -f $file; fi; done

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