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Code Block
languagebash
# download the test data:
wget http://repo.mouseimaging.ca/repo/Pydpiper_test_files/test-data.tar.gz
tar xf test-data.tar test-data

# alter the config file in the test-data directory as needed:
{some_editor} test-data/sample.cfg

# run the test:
{pydpiper-repository}/pydpiper_testing/test_MBM_and_MAGeT.py test-data/

# the program will indicate success, which is along these lines (the number might be slightly different):
[1] "In these test data, we've introduced a 10% decrease in the volume of the striatum in the mutants. The difference we found using the image registration software is: -7.65%."

[1] "Succeeded! We expect the registration procedure to underestimate \nthethe true underlying change (see https://www.ncbi.nlm.nih.gov/pubmed/23756204). The difference found lies within our acceptance boundaries: -12.5% and -7.5%."
 

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