Old Home Page
Content from the home page prior to our Wiki update session on November 28th, 2019.
Software developed at MICe:
Name | Description |
---|---|
Analysis of data inside MINC volumes. | |
Software to construct and run pipelines (image registration and otherwise) | |
Iterative Model Building (MBM.py) | Image registration, written with the Pydpiper framework. |
MAGeT | Creating atlases with multiple automatically generated templates |
Longitudinal registration tools | Alternate approaches to registration and analysis of longitudinal data. |
Suite of MINC tools developed at the Mouse Imaging Centre | |
Visualize geometry and associated files | |
Software to reconstruct OPT images | |
CT to MINC | software to create a 3D minc file from .tif files (microCT) |
Software Tips and Tricks | General tips and tricks on software/computer related things |
Atlases.
Atlases currently under development and available for use at the Mouse Imaging Centre can be found here: Mouse Brain Atlases
Code for running the MAGeT algorithm for atlas generation is available for download. More information can be found on the MAGeT wiki page.