scp -r /hpf/largeprojects/MICe/yourname/inputfiles/ email@example.com:/scratch/yourname
This code must be run from a terminal running in hpf or our local system, not Graham.
Your main disk spaces are $HOME, $SCRATCH, and $PROJECT. $HOME is small and should be used mostly for text files, etc. $SCRATCH should be used for running pipelines. It is not backed up and inactive files are deleted regularly (you will receive email prior to any deletion). $PROJECT can be used for storing completed pipelines and analyses.