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languagebash
twolevel_model_building.py --num-executors=600 
--init-model=/hpf/largeprojects/MICe/tools/initial-models/Pydpiper-MEMRI-90micron-saddle-july-2015/p65_MEMRI_mouse_brain.mnc
--pipeline-name=09feb17 
--lsq12-protocol=/hpf/largeprojects/MICe/tools/protocols/linear/Pydpiper_testing_default_lsq12.csv
--nlin-protocol=/hpf/largeprojects/MICe/tools/protocols/nonlinear/Pydpiper_mincANTS_standard_90_micron.pl
--registration-method=ANTSmincANTS 
--no-run-maget 
--maget-no-mask
--csv-file=/hpf/largeprojects/MICe/vousdend/CREB_EE/documents/creb_ee_images_to_reg_09feb17.csv
--output-dir=/hpf/largeprojects/MICe/vousdend/CREB_EE/registration/09feb17/

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