This page provides a history of the Tips and Tricks presented at MICe Meetings and Computing Meetings.
September 1, 2016: dplyr and %>% (pipes) in R
The presentation that Chris gave on September 1, 2016 can be found here:
September 20, 2012: sge tips
October 4, 2012: anatGetAll
anatGetAll is part of the RMINC package and is a useful way to calculate volumes of different brain regions. A typical anatGetAll call might look like this:
However, by not specifying any additional arguments, this call will use the defaults for the volume calculation type or atlas labels. These defaults are set for 56 micron brain-in-the-basket studies, so if this is what you are doing, you're fine.
If you wish to use MAGeT to calculate structure volumes or want to use an atlas with an alternate set of label definitions, additional arguments must be specified.