Welcome to the public wiki of the Mouse Imaging Centre.
If you are new here, the best place to start is probably here: Welcome to MICe
Software developed at MICe:
Analysis of data inside MINC volumes.
Software to construct and run pipelines (image registration and otherwise)
|Iterative Model Building (MBM.py)||Image registration, written with the Pydpiper framework.|
|MAGeT||Creating atlases with multiple automatically generated templates|
|Longitudinal registration tools||Alternate approaches to registration and analysis of longitudinal data.|
Suite of MINC tools developed at the Mouse Imaging Centre
Visualize geometry and associated files
Software to reconstruct OPT images
|CT to MINC||software to create a 3D minc file from .tif files (microCT)|
|Software Tips and Tricks||General tips and tricks on software/computer related things|
Atlases currently under development and available for use at the Mouse Imaging Centre can be found here: Mouse Brain Atlases
Code for running the MAGeT algorithm for atlas generation is available for download. More information can be found on the MAGeT wiki page.